Java-based protein sequence alignment application.
Pfaat (Protein Family Alignment Annotation Tool) is a Java-based protein sequence alignment application designed to facilitate the analysis, curation, and annotation of large protein sequence families. Key features of Pfaat include the ability to align collections of sequences, cluster and/or group sequences into subfamilies, analyze sequences based on a number of similarity criteria, visualize protein structure, and annotate sequences and specific residue positions with text descriptions.
What's new in Pfaat
Version 1.0.034 now is distributed using Java Web Start technology from the project home page.