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SearchGUI is a user-friendly open-source graphical user interface for configuring and running proteomics identification search engines and de novo sequencing algorithms, currently supporting X! Tandem, MS-GF+, MS Amanda, MyriMatch, Comet, Tide, Andromeda, OMSSA, Novor and DirecTag.

To start using SearchGUI, unzip the downloaded file, and double-click the SearchGUI-X.Y.Z.jar file. No additional installation required! To visualize and analyze the search results we recommend PeptideShaker. For developer access to the search results we recommend the use of compomics-utilities.

What's New

Version 3.2.6:
  • LIBRARY UPDATE: Updated utilities to version 4.10.0.


  • OS X10.1.5 or later

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SearchGUI User Discussion


Current Version (3.x)


Downloads 50
Version Downloads 50
License Free
Date 02 Feb 2017
Platform Intel 64 / OS X / Intel 32
Price Free
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