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PeptideShaker is a search engine independent platform for interpretation of proteomics identification results from multiple search engines, currently supporting X!Tandem, MS-GF+, MS Amanda, OMSSA, MyriMatch, Comet, Tide, Mascot, Andromeda and mzIdentML. By combining the results from multiple search engines, while re-calculating PTM localization scores and redoing the protein inference, PeptideShaker attempts to give you the best possible understanding of your proteomics data!

PeptideShaker currently supports nine different analysis tasks:

  • Overview: get a simple yet detailed

What's New in PeptideShaker

Version 1.16.40:
Bug fix:
  • Fixed a bug in the use of user-defined terminal PTMs.
Library update:
  • Updated utilities to version 4.12.14

Requirements for PeptideShaker

  • OS X 10.7.3 or later
  • Java version 7 or newer
  • 4 GB of RAM is recommended
  • Monitor with 1280 x 800 resolution or higher

For more information please visit this page

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PeptideShaker User Discussion

Current Version (1.x)
Downloads 65
Version Downloads 5
License Free
Date 16 May 2019
Platform Intel 64 / OS X
Price Free
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