While CLC RNA Workbench 4.8.1 is still available for download, it has been discontinued and replaced by CLC Main Workbench 6.6.2.

CLC RNA Workbench is a bioinformatics program for advanced RNA sequence analysis. All analyses are fully integrated in one single, user-friendly, and intuitive software application. Some analyses are:

• Secondary structure prediction
• Graphical view and editing of secondary structure
• Tabular view of structures and energy contributions
• Symbolic representation in sequence view
• Pattern search
• BLAST searches
• General sequence analyses
• Nucleotide analyses
• Sequence alignment
• Dot plots
• Virtual gel viewer

Minor improvements:

• Translate to protein creates sequence lists as results when more than 10 sequences are produced. This greatly improves performance when translating large amounts of proteins
• It is now possible to specify the number formatting in tables in the View Preferences.

• Fixed: Downloading of protein sequences from NCBI fails.
• Fixed: Opening external files (e.g. pdf files or Word documents) with spaces in the file name does not work on Windows.