Genomorama
1.5
Genomorama
1.5Multi-scale, multi-genome visualization and analysis.
Overview
Genomorama is a software program for interactively displaying multiple genomes.
It provides a powerful yet easy to use interface that leverages the visualization power of modern computers (via OpenGL) and the substantial bioinformatic infrastructure provided by the NCBI (via the NCBI C toolkit).
Genomorama is written in portable, highly optimized C++ and comes in three "flavors" that allow it to run natively on (most) modern operating systems: OS X (using Carbon), Microsoft Windows (using MFC), and Linux (using Motif). Executables and source code are freely provided for all flavors.
What's new in Genomorama
Version 1.5:
- Fixed bug in highlighting matched regions when searching with primers or probes that contain degenerate bases.
- Fixed bug in parsing gbk files that contain single base annotations on the complement strand.
- Fixed bug in DNA3Seq::find() that missed exact matches at 3' end of target sequence.
- Fixed bug in annotation editor (annotation type control was not enabled).
- Fixed bug that required the selection of a genome when loading a genome plot when only a single genome is loaded. When only a single genome is present, assume implicit selection.
- Custom color records are now saved to and read from GBK files.
- Fixed bug when downloading multi-entry records from NCBI (i.e. gi|46810958)
- Fixed fragile parsing of annotation range in the annotation edit dialog. Changed all displayed ranges to match the Genbank range format (i.e. "start..stop").
- [Motif] Fixed download dialog bug.
- Fixed bug that prevented downloading of very large Genbank records (i.e. human chromosomes).
- Fixed bug that omitted intergenic space following single base annotations (i.e. SNP's).
- Added an OS X Intel-specific executable and made the information dialog box resizable.
- Added the number of Watson and Crick matches to all hybridization based search results.
Free
App requirements:
- Intel 32
- PPC 32
- Mac OS X 10.2.8 or later
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