LYCESTRA you don't need preferences in the app. Mac OS X already handles the case where multiple apps will open the same file. You configure it by "show info" on any such file you want it to open, "Open with..." tab. And you can change it for just the single file, or all at once. And the application that will open it is the one that determines the icon.
I actually hacked one together by copying "WMV Player", changing references of WMV Player to Perian Player in file names and the PLists (so it isn't confused as another WMV Player, but is seperate new app), changing the file assocations from WM to those in the script here, and replacing icons with Perian's and the icons in this. Of course, I'm not about to distribute it. The copyright issues with Flip4mac as well as this script are all over. But it works perfectly as I'd expect it to since the binary for it just forwards to quicktime, and the plist now tells that binary (and Finder) it will open the Perian file types. And of course, you would only need one app, but each file type is handled individually in the Finder's "open as" deal.
(Version 2.2)