When you scan a document you select the format you want to use from a pop-up menu (e.g. APA, Science, Turabian, etc.). To get numbered output you'd select a format designed to do that (e.g. Science, J Immunol, etc.). Questions like this are best addressed by contacting tech support directly (support@sonnysoftware.com) or posting to our forum (https://www.sonnysoftware.com/phpBB3/index.php).
Jon
Sonny Software
[Version 11.0.0]
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Jon
Sonny Software