The issue commented on by BRETT4 was a result of bad firmware in the Canon 40D outputting invalid CR2 files and has long since been resolved. The camera's firmware update fixes the issue, but also GPSPhotoLinker works around the problem. See the Version 7.05 release notes of ExifTool, http://www.sno.phy.queensu.ca/~phil/exiftool/history.html
[Version 1.6]
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GPSPhotoLinker