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Geneious
Geneious 5.6.3
Your rating: Now say why...

0

Sequence analysis software for molecular biologists.   Demo
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    87.1 MB
  • Download Demo
    86.6 MB (vers. 5.6.2 (32-bit))
  • Visit Developer's Site
    Biomatters Ltd
Geneious is research software for biologists, not computer scientists.

Geneious combines all the major DNA and protein sequence analysis tools into one revolutionary software solution! Its ease of use makes bioinformatics accessible to any biologist. It even runs on all major operating systems and is very affordable.

Features include: Sequence alignment, Contig assembly, primers, restriction analysis, BLAST, phylogenetics, automatic publication updates and more.

Note: For pricing, request a quote on the developer's website.
What's New
Version 5.6.3:

Bugs fixed:

  • Fixed crash importing or copying some documents into the "Searches" folder or sub-folder
  • Fixed crash when viewing some circular sequences
  • Fixed crash when saving some sequences from the sequence viewer
  • Fixed crash when importing some fasta files
  • Fixed crash when mapping reads longer than the circular reference sequence
  • Fixed crash when importing files from GenomeQuest
  • Fixed annotation type drop down being filled with partial type names after entering a custom type
  • Find hang when viewing big contigs with annotations on the consensus sequence
  • Fixed incompatibility with Microsoft SQL Server
  • Fixed annotations going missing in some situations when adding annotations to an alignment/contig which references sequences in a sequence list
  • Fixed 'compare annotations' not working correctly with multiple contigs selected
  • Made changing restriction site annotations on a sequence not require deactivating active parent links or propagating changes to actively linked descendant documents
Version 5.6.3:

Bugs fixed:

  • Fixed crash importing or copying some documents into the "Searches" folder or sub-folder
  • Fixed crash when viewing some circular sequences
  • Fixed crash when saving some sequences from the sequence viewer
  • Fixed crash when importing some fasta files
  • Fixed crash when mapping reads longer than the circular reference sequence
  • Fixed crash when more...
Requirements
  • PPC / Intel
  • Mac OS X 10.5 or later
  • Java 1.5 or later
  • 64-bit version requires 4GB RAM or greater



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Geneious User Discussion (Write a Review)
ver. 5.x:
Your rating: Now say why...
Overall:
(2)

sort: smiles | time
burypromote

+31
Vitaly commented on 23 Apr 2012
it's 5.6.2
[Version 5.6.1]


burypromote
+1

+50
Frankof commented on 10 Oct 2011
"free" in this case means $795. Oh, well.
[Version 5.5.3]

3 Replies

burypromote
+1

+83
MacUpdate-Warren replied on 10 Oct 2011
Thanks for pointing out the error in our listing. I've updated it (based on the "Student pricing option listed on the developer's site).
burypromote

+544
Negritude replied on 02 Nov 2011
The basic version is free for academic/student use. Here's a feature comprison:

http://www.geneious.com/default,290,feature_comparison_chart.sm
burypromote
+1

+50
Frankof replied on 03 Nov 2011
@Negritude: thanks for the info. However, a sequence analysis program that in the free version does not even allow editing sequences (let alone sequence alignments and annotations), or the search for ORFs, or primer design, is hardly useful. I recommend "SerialCloner" which does a good job in my lab, and is really free.
burypromote

+544
Negritude commented on 30 Mar 2011
Note that 5.4.0 is a beta. The current stable release is 5.3.6. Check the developer's web site for more info.
[Version 5.4.0]

1 Reply

burypromote

+544
Negritude replied on 19 Apr 2011
5.4.1 is also beta.
burypromote
+1

+1

Pete028 reviewed on 10 Jul 2009
Geneious is a superb piece of software for all molecular biologists. I love it. It saved me heaps of time.
[Version 4.7.1]


burypromote
+4

+4

mikenz reviewed on 22 Aug 2006
For a long time scientists who generate or analyse DNA sequences have been using multiple pieces of software to: 1) view chromatographs, 2) trim sequences 3) Blast data 4) align sequences 5) build phylogenetic trees. Chopping and changing between different file formats and at times different operating systems (Mac, PC, Unix/Linux) has been a frustrating and time-consuming exercise. Current and future releases of Geneious (www.geneious.com) offer a solution to (most) of these frustrations. The software logo “research in a flash” accurately describe the potential of Geneious - only months after its release it has become the “Swiss army knife” of bioinformatics software.

The user interface of Geneious is both attractive and intuitive. While the software has some “bell and whistles” for more complex tasks one of its key attributes is a simple user interface. Earlier this year I used the Beta-release in some undergraduate teaching labs - with great success. Students did a Genbank search, downloaded files, did an alignment and built a phylogenetic tree (with bootstrapping) all in the blink of an eye. If you are looking for a piece of bioinformatics software for teaching purposes look no further than Geneious.

With the integration of sequence chromatograph viewing and editing of DNA sequences/alignments (new in version 2) Geneious is now firmly embedded in my research practices. As is the case with any new software there are a few features that don't work quite as well as you might like - but the good news is that if you write to them they will likely fix it up asap. My request to provide a variety of nucleotide colour schemes was implemented within 2 weeks. Moreover, the software is structured in such a way that “new” plugins can be written and incorporated with relative ease.

The Geneious team has made available a freeware version and a pro version that (for a price) allows you to access more functionality. Based on the hours of time this program has saved me already I would not even blink at the academic price tag of $133 (USD) - or cheaper for students.

The software almost has too many features to comment on in any one review (e.g. “agents” and collaboration modes) - the best advice I can give is to download it, do the tutorial and test drive it on a bioinformatics task that you regularly conduct - it won't disappoint.
Cheers,
[Version 2.0.4]


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Downloads:24,462
Version Downloads:109
Type:Education : Teaching Tools
License:Demo
Date:14 May 2012
Platform:PPC / Intel
Price:Free0.00
Overall (Version 5.x):
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Geneious is research software for biologists, not computer scientists.

Geneious combines all the major DNA and protein sequence analysis tools into one revolutionary software solution! Its ease of use makes bioinformatics accessible to any biologist. It even runs on all major operating systems and is very affordable.

Features include: Sequence alignment, Contig assembly, primers, restriction analysis, BLAST, phylogenetics, automatic publication updates and more.

Note: For pricing, request a quote on the developer's website.
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