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Sequence Analysis is sequence editing, reverse complement, protein translation, ORF finding, secondary structure, composition, isoelectric point, primer design, pairwise comparison, publish layout and sequence reformatting. Fetches sequence entries directly from the NCBI via Accession number or GID. Reads most sequence formats.

This (Java) application is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware.

What's New

Version 2.0.0: Release notes were unavailable when this listing was updated.


  • Mac OS X 10.7.3 or later
  • Java 7 or later

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Sequence Analysis User Discussion

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Anonymous Member IconReview

quite nice tool, if only alignmental displaying could be improved better (just as biOpen, MacVector... do)

Reply1 reply
Version 1.5
Will Gilbert (Developer)

Version 1.5.3 has sequence numbering in the pairwise alignment. I didn't see this until after I posted v 1.4

Vitaly Member IconComment+55

this is a great and free program whch my ab has been using for a long time, since the very first available version. it is getting better and remains free. this is unlike dnastrider which is rarely updated, has old GUI and is very expensive.

Reply0 replies
Version 1.5
There are no Ratings for this App yet.
> 5 0


Current Version (2.x)


Downloads 5,963
Version Downloads 551
License Free
Date 12 May 2013
Platform Intel 64 / OS X
Price Free
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